vdj_pipe
pipeline for processing DNA sequence data
Typedefs | Functions
vdj_pipe::match::anonymous_namespace{me_factory.cpp} Namespace Reference

Typedefs

typedef boost::tokenizer< boost::char_separator< char > > tokenizer
 
typedef tokenizer::const_iterator tok_iter
 

Functions

boost::char_separator< char > separator (",\t|")
 
 VDJ_PIPE_KEYWORD_STRUCT (kwds,(start)(end)(length)(seq_file)(csv_file)(sequence)(required)(min_score)(max_mismatches)(require_best)(min_match_length)(allow_gaps)(cut_lower)(cut_upper)(value_name)(name)(score_name)(identity_name))
 
 VDJ_PIPE_KEYWORD_STRUCT (position_kwds,(pos)(before)(after))
 
 VDJ_PIPE_KEYWORD_STRUCT (csv_kwds,(path)(names_column)(sequences_column)(values_column)(skip_header))
 

Typedef Documentation

typedef tokenizer::const_iterator vdj_pipe::match::anonymous_namespace{me_factory.cpp}::tok_iter
typedef boost::tokenizer<boost::char_separator<char> > vdj_pipe::match::anonymous_namespace{me_factory.cpp}::tokenizer

Function Documentation

boost::char_separator<char> vdj_pipe::match::anonymous_namespace{me_factory.cpp}::separator ( ,
\t|"   
)
vdj_pipe::match::anonymous_namespace{me_factory.cpp}::VDJ_PIPE_KEYWORD_STRUCT ( kwds  ,
(start)(end)(length)(seq_file)(csv_file)(sequence)(required)(min_score)(max_mismatches)(require_best)(min_match_length)(allow_gaps)(cut_lower)(cut_upper)(value_name)(name)(score_name)(identity_name)   
)
vdj_pipe::match::anonymous_namespace{me_factory.cpp}::VDJ_PIPE_KEYWORD_STRUCT ( position_kwds  ,
(pos)(before)(after)   
)
vdj_pipe::match::anonymous_namespace{me_factory.cpp}::VDJ_PIPE_KEYWORD_STRUCT ( csv_kwds  ,
(path)(names_column)(sequences_column)(values_column)(skip_header)   
)