vdj_pipe
pipeline for processing DNA sequence data
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Typedefs | |
typedef boost::tokenizer< boost::char_separator< char > > | tokenizer |
typedef tokenizer::const_iterator | tok_iter |
Functions | |
boost::char_separator< char > | separator (",\t|") |
VDJ_PIPE_KEYWORD_STRUCT (kwds,(start)(end)(length)(seq_file)(csv_file)(sequence)(required)(min_score)(max_mismatches)(require_best)(min_match_length)(allow_gaps)(cut_lower)(cut_upper)(value_name)(name)(score_name)(identity_name)) | |
VDJ_PIPE_KEYWORD_STRUCT (position_kwds,(pos)(before)(after)) | |
VDJ_PIPE_KEYWORD_STRUCT (csv_kwds,(path)(names_column)(sequences_column)(values_column)(skip_header)) | |
typedef tokenizer::const_iterator vdj_pipe::match::anonymous_namespace{me_factory.cpp}::tok_iter |
typedef boost::tokenizer<boost::char_separator<char> > vdj_pipe::match::anonymous_namespace{me_factory.cpp}::tokenizer |
boost::char_separator<char> vdj_pipe::match::anonymous_namespace{me_factory.cpp}::separator | ( | " | , |
\t|" | |||
) |
vdj_pipe::match::anonymous_namespace{me_factory.cpp}::VDJ_PIPE_KEYWORD_STRUCT | ( | kwds | , |
(start)(end)(length)(seq_file)(csv_file)(sequence)(required)(min_score)(max_mismatches)(require_best)(min_match_length)(allow_gaps)(cut_lower)(cut_upper)(value_name)(name)(score_name)(identity_name) | |||
) |
vdj_pipe::match::anonymous_namespace{me_factory.cpp}::VDJ_PIPE_KEYWORD_STRUCT | ( | position_kwds | , |
(pos)(before)(after) | |||
) |
vdj_pipe::match::anonymous_namespace{me_factory.cpp}::VDJ_PIPE_KEYWORD_STRUCT | ( | csv_kwds | , |
(path)(names_column)(sequences_column)(values_column)(skip_header) | |||
) |