vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Command_line_options Member List

This is the complete list of members for vdj_pipe::Command_line_options, including all inherited members.

add_config_file(std::string const &config_fn)vdj_pipe::Command_line_optionsinline
args_provided() const vdj_pipe::Command_line_optionsinline
args_provided_vdj_pipe::Command_line_optionsprivate
BOOST_STATIC_CONSTANT(std::size_t, unset=static_cast< std::size_t >(-1))vdj_pipe::Command_line_optionsprivate
Command_line_options()vdj_pipe::Command_line_optionsinline
Command_line_options(int argc, char *argv[])vdj_pipe::Command_line_options
config_files() const vdj_pipe::Command_line_optionsinline
config_fn_vdj_pipe::Command_line_optionsprivate
help_vdj_pipe::Command_line_optionsprivate
help_opt() const vdj_pipe::Command_line_optionsinline
in_path_vdj_pipe::Command_line_optionsprivate
init_options()vdj_pipe::Command_line_optionsprivate
input_csv_vdj_pipe::Command_line_optionsprivate
is_help() const vdj_pipe::Command_line_optionsinline
max_file_reads() const vdj_pipe::Command_line_optionsinline
max_file_reads_vdj_pipe::Command_line_optionsprivate
max_reads() const vdj_pipe::Command_line_optionsinline
max_reads_vdj_pipe::Command_line_optionsprivate
no_stamp_vdj_pipe::Command_line_optionsprivate
od_vdj_pipe::Command_line_optionsprivate
options_to_tree() const vdj_pipe::Command_line_optionsprivate
out_path_vdj_pipe::Command_line_optionsprivate
print_help(std::ostream &os) const vdj_pipe::Command_line_options
print_info(std::ostream &os)vdj_pipe::Command_line_optionsstatic
print_usage(std::ostream &os)vdj_pipe::Command_line_optionsstatic
print_version(std::ostream &os)vdj_pipe::Command_line_optionsstatic
set_path_input(std::string const &in_path)vdj_pipe::Command_line_optionsinline
set_path_output(std::string const &out_path)vdj_pipe::Command_line_optionsinline
tree() const vdj_pipe::Command_line_options
version() const vdj_pipe::Command_line_optionsinline
version_vdj_pipe::Command_line_optionsprivate