vdj_pipe::Find_shared Member List

This is the complete list of members for vdj_pipe::Find_shared, including all inherited members.

bulk_stats()	vdj_pipe::Find_shared	private
consensus_trim_	vdj_pipe::Find_shared	private
counts_v typedef	vdj_pipe::Find_shared	private
cv_	vdj_pipe::Find_shared	private
delimiter() const	vdj_pipe::detail::Step_base	inline
dups_	vdj_pipe::Find_shared	private
finish()	vdj_pipe::Find_shared
g_dups_	vdj_pipe::Find_shared	private
g_unique_	vdj_pipe::Find_shared	private
gml_	vdj_pipe::Find_shared	private
group_stats()	vdj_pipe::Find_shared	private
hist_array_t typedef	vdj_pipe::Find_shared	private
ids_	vdj_pipe::Find_shared	private
init_stream(boost::scoped_ptr< File_ostream > &, Variable_path const &, const compression::Compression, const format::Format) const	vdj_pipe::Find_shared	private
min_duplicates_	vdj_pipe::Find_shared	private
n_unique_	vdj_pipe::Find_shared	private
pe	vdj_pipe::Find_shared
pt	vdj_pipe::Find_shared
qual_type typedef	vdj_pipe::detail::Step_base
redund_hist_	vdj_pipe::Find_shared	private
reset_access(Value_ids_single const &ids)	vdj_pipe::detail::Step_base_single	inline
reverse_	vdj_pipe::Find_shared	private
rgs_	vdj_pipe::Find_shared	private
run()	vdj_pipe::Find_shared
seq_type typedef	vdj_pipe::detail::Step_base
sorted_ids() const	vdj_pipe::Find_shared	private
ss_	vdj_pipe::Find_shared	private
Step_base(boost::property_tree::ptree const &pt, Pipe_environment const &pe)	vdj_pipe::detail::Step_base
Step_base_single(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe)	vdj_pipe::detail::Step_base_single	inlineprotected
summ_	vdj_pipe::Find_shared	private
summary(std::ostream &os) const	vdj_pipe::Find_shared
trim_	vdj_pipe::Find_shared	private
unique_	vdj_pipe::Find_shared	private
unique_count_	vdj_pipe::Find_shared	private
unset_val_	vdj_pipe::Find_shared	private
val_map_t typedef	vdj_pipe::Find_shared	private
val_ref_vector typedef	vdj_pipe::Find_shared	private
val_vector typedef	vdj_pipe::Find_shared	private
value_type typedef	vdj_pipe::Find_shared	private
VDJ_PIPE_STATIC_STRING_METHOD(comment,"output sequence reads present in multiple sets") Find_shared(Vm_access_single const &vma	vdj_pipe::Find_shared
vm_	vdj_pipe::Find_shared	private
vma_	vdj_pipe::detail::Step_base_single	protected
vma_type typedef	vdj_pipe::detail::Step_base_single
write_redundancy(std::ostream &os, hist_array_t const &ha, std::vector< Mapped_id > const &sorted_vi) const	vdj_pipe::Find_shared	private
write_redundancy_summ(std::ostream &os, hist_array_t const &ha, std::vector< Mapped_id > const &sorted_vi) const	vdj_pipe::Find_shared	private
write_sharing_matrix(std::ostream &os, counts_v const &cv, xstats const &xs, std::vector< Mapped_id > const &sorted_vi) const	vdj_pipe::Find_shared	private
write_summary(std::ostream &os, counts_v const &uc, counts_v const &guc, std::vector< Mapped_id > const &sn) const	vdj_pipe::Find_shared	private
xstats typedef	vdj_pipe::Find_shared	private