vdj_pipe
pipeline for processing DNA sequence data
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vdj_pipe
Parser_fastq
vdj_pipe::Parser_fastq Member List
This is the complete list of members for
vdj_pipe::Parser_fastq
, including all inherited members.
check
() const
vdj_pipe::detail::Parser_line
inline
protected
Def
enum value
vdj_pipe::Parser_fastq
private
End
enum value
vdj_pipe::Parser_fastq
private
fis_
vdj_pipe::detail::Parser_line
protected
get_defstr
()
vdj_pipe::Parser_fastq
inline
vdj_pipe::detail::Parser_line::get_defstr
(const char tag)
vdj_pipe::detail::Parser_line
inline
protected
get_id
()
vdj_pipe::Parser_fastq
inline
vdj_pipe::detail::Parser_line::get_id
(const char tag)
vdj_pipe::detail::Parser_line
inline
protected
get_qual
()
vdj_pipe::Parser_fastq
inline
get_qual
(InsertIter i)
vdj_pipe::Parser_fastq
inline
get_record
()
vdj_pipe::Parser_fastq
inline
get_sequence
()
vdj_pipe::Parser_fastq
inline
vdj_pipe::detail::Parser_line::get_sequence
(const char tag)
vdj_pipe::detail::Parser_line
inline
protected
has_next
() const
vdj_pipe::detail::Parser_line
inline
line_
vdj_pipe::detail::Parser_line
protected
line_num
() const
vdj_pipe::detail::Parser_line
inline
next_record
()
vdj_pipe::Parser_fastq
inline
offset_
vdj_pipe::Parser_fastq
private
Parser_fastq
(File_input const &fi, const char offset=qual_offset)
vdj_pipe::Parser_fastq
inline
explicit
Parser_fastq
(std::istream &is, const compression::Compression compr=compression::none, const char offset=qual_offset)
vdj_pipe::Parser_fastq
inline
explicit
Parser_line
(File_input const &fi)
vdj_pipe::detail::Parser_line
inline
explicit
protected
Parser_line
(std::istream &is, const compression::Compression compr)
vdj_pipe::detail::Parser_line
inline
explicit
protected
Qual
enum value
vdj_pipe::Parser_fastq
private
qual_offset
vdj_pipe::Parser_fastq
static
quality
typedef
vdj_pipe::Parser_fastq
record
typedef
vdj_pipe::Parser_fastq
seek_line
(const char tag)
vdj_pipe::detail::Parser_line
inline
protected
Seq
enum value
vdj_pipe::Parser_fastq
private
sequence
typedef
vdj_pipe::Parser_fastq
set_meta
(Seq_meta &sm, const char tag)
vdj_pipe::detail::Parser_line
inline
protected
skip_line
()
vdj_pipe::detail::Parser_line
inline
protected
State
enum name
vdj_pipe::Parser_fastq
private
state_
vdj_pipe::Parser_fastq
private
str_
vdj_pipe::detail::Parser_line
protected
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