vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Parser_fastq Member List

This is the complete list of members for vdj_pipe::Parser_fastq, including all inherited members.

check() const vdj_pipe::detail::Parser_lineinlineprotected
Def enum valuevdj_pipe::Parser_fastqprivate
End enum valuevdj_pipe::Parser_fastqprivate
fis_vdj_pipe::detail::Parser_lineprotected
get_defstr()vdj_pipe::Parser_fastqinline
vdj_pipe::detail::Parser_line::get_defstr(const char tag)vdj_pipe::detail::Parser_lineinlineprotected
get_id()vdj_pipe::Parser_fastqinline
vdj_pipe::detail::Parser_line::get_id(const char tag)vdj_pipe::detail::Parser_lineinlineprotected
get_qual()vdj_pipe::Parser_fastqinline
get_qual(InsertIter i)vdj_pipe::Parser_fastqinline
get_record()vdj_pipe::Parser_fastqinline
get_sequence()vdj_pipe::Parser_fastqinline
vdj_pipe::detail::Parser_line::get_sequence(const char tag)vdj_pipe::detail::Parser_lineinlineprotected
has_next() const vdj_pipe::detail::Parser_lineinline
line_vdj_pipe::detail::Parser_lineprotected
line_num() const vdj_pipe::detail::Parser_lineinline
next_record()vdj_pipe::Parser_fastqinline
offset_vdj_pipe::Parser_fastqprivate
Parser_fastq(File_input const &fi, const char offset=qual_offset)vdj_pipe::Parser_fastqinlineexplicit
Parser_fastq(std::istream &is, const compression::Compression compr=compression::none, const char offset=qual_offset)vdj_pipe::Parser_fastqinlineexplicit
Parser_line(File_input const &fi)vdj_pipe::detail::Parser_lineinlineexplicitprotected
Parser_line(std::istream &is, const compression::Compression compr)vdj_pipe::detail::Parser_lineinlineexplicitprotected
Qual enum valuevdj_pipe::Parser_fastqprivate
qual_offsetvdj_pipe::Parser_fastqstatic
quality typedefvdj_pipe::Parser_fastq
record typedefvdj_pipe::Parser_fastq
seek_line(const char tag)vdj_pipe::detail::Parser_lineinlineprotected
Seq enum valuevdj_pipe::Parser_fastqprivate
sequence typedefvdj_pipe::Parser_fastq
set_meta(Seq_meta &sm, const char tag)vdj_pipe::detail::Parser_lineinlineprotected
skip_line()vdj_pipe::detail::Parser_lineinlineprotected
State enum namevdj_pipe::Parser_fastqprivate
state_vdj_pipe::Parser_fastqprivate
str_vdj_pipe::detail::Parser_lineprotected