vdj_pipe
pipeline for processing DNA sequence data
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vdj_pipe
Qual_stats
vdj_pipe::Qual_stats Member List
This is the complete list of members for
vdj_pipe::Qual_stats
, including all inherited members.
delimiter
() const
vdj_pipe::detail::Step_base
inline
finish
()
vdj_pipe::Qual_stats
fractions
typedef
vdj_pipe::Qual_stats
private
fracts
()
vdj_pipe::Qual_stats
inline
private
static
heat_map
typedef
vdj_pipe::Qual_stats
private
hm_
vdj_pipe::Qual_stats
private
lh_
vdj_pipe::Qual_stats
private
mqh_
vdj_pipe::Qual_stats
private
out_hm_
vdj_pipe::Qual_stats
private
out_len_hist_
vdj_pipe::Qual_stats
private
out_mqh_
vdj_pipe::Qual_stats
private
out_qs_
vdj_pipe::Qual_stats
private
Qual_stats
(Vm_access_single const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)
vdj_pipe::Qual_stats
qual_type
typedef
vdj_pipe::detail::Step_base
reset_access
(Value_ids_single const &ids)
vdj_pipe::detail::Step_base_single
inline
run
()
vdj_pipe::Qual_stats
seq_type
typedef
vdj_pipe::detail::Step_base
Step_base
(boost::property_tree::ptree const &pt, Pipe_environment const &pe)
vdj_pipe::detail::Step_base
Step_base_single
(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe)
vdj_pipe::detail::Step_base_single
inline
protected
summary
(std::ostream &) const
vdj_pipe::detail::Step_base
inline
VDJ_PIPE_STATIC_STRING_METHOD
(comment,"calculate quality statistics of sequencing reads") VDJ_PIPE_STATIC_STRING_METHOD(description
vdj_pipe::Qual_stats
vma_
vdj_pipe::detail::Step_base_single
protected
vma_type
typedef
vdj_pipe::detail::Step_base_single
write_heat_map
() const
vdj_pipe::Qual_stats
private
write_len_hist
() const
vdj_pipe::Qual_stats
private
write_meanq_hist
() const
vdj_pipe::Qual_stats
private
write_qstats
() const
vdj_pipe::Qual_stats
private
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