vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Qual_stats Member List

This is the complete list of members for vdj_pipe::Qual_stats, including all inherited members.

delimiter() const vdj_pipe::detail::Step_baseinline
finish()vdj_pipe::Qual_stats
fractions typedefvdj_pipe::Qual_statsprivate
fracts()vdj_pipe::Qual_statsinlineprivatestatic
heat_map typedefvdj_pipe::Qual_statsprivate
hm_vdj_pipe::Qual_statsprivate
lh_vdj_pipe::Qual_statsprivate
mqh_vdj_pipe::Qual_statsprivate
out_hm_vdj_pipe::Qual_statsprivate
out_len_hist_vdj_pipe::Qual_statsprivate
out_mqh_vdj_pipe::Qual_statsprivate
out_qs_vdj_pipe::Qual_statsprivate
Qual_stats(Vm_access_single const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)vdj_pipe::Qual_stats
qual_type typedefvdj_pipe::detail::Step_base
reset_access(Value_ids_single const &ids)vdj_pipe::detail::Step_base_singleinline
run()vdj_pipe::Qual_stats
seq_type typedefvdj_pipe::detail::Step_base
Step_base(boost::property_tree::ptree const &pt, Pipe_environment const &pe)vdj_pipe::detail::Step_base
Step_base_single(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe)vdj_pipe::detail::Step_base_singleinlineprotected
summary(std::ostream &) const vdj_pipe::detail::Step_baseinline
VDJ_PIPE_STATIC_STRING_METHOD(comment,"calculate quality statistics of sequencing reads") VDJ_PIPE_STATIC_STRING_METHOD(descriptionvdj_pipe::Qual_stats
vma_vdj_pipe::detail::Step_base_singleprotected
vma_type typedefvdj_pipe::detail::Step_base_single
write_heat_map() const vdj_pipe::Qual_statsprivate
write_len_hist() const vdj_pipe::Qual_statsprivate
write_meanq_hist() const vdj_pipe::Qual_statsprivate
write_qstats() const vdj_pipe::Qual_statsprivate