vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Vm_access_paired Member List

This is the complete list of members for vdj_pipe::Vm_access_paired, including all inherited members.

begin() const vdj_pipe::Value_mapinline
clear_values()vdj_pipe::Value_mapinline
const_iterator typedefvdj_pipe::Value_map
description_fwd() const vdj_pipe::Vm_access_pairedinline
description_fwd(std::string const &descr)vdj_pipe::Vm_access_pairedinline
description_rev() const vdj_pipe::Vm_access_pairedinline
description_rev(std::string const &descr)vdj_pipe::Vm_access_pairedinline
end() const vdj_pipe::Value_mapinline
file_read_count() const vdj_pipe::Value_mapinline
file_read_count_incr()vdj_pipe::Value_mapinline
file_read_count_reset()vdj_pipe::Value_mapinline
find_id(std::string const &name) const vdj_pipe::Value_mapinline
ids_vdj_pipe::Vm_access_pairedprotected
insert_name(std::string const &name)vdj_pipe::Value_mapinline
insert_new_name(std::string const &name)vdj_pipe::Value_mapinline
interval_fwd() const vdj_pipe::Vm_access_pairedinline
interval_fwd(sequence_interval const &si)vdj_pipe::Vm_access_pairedinline
interval_rev() const vdj_pipe::Vm_access_pairedinline
interval_rev(sequence_interval const &si)vdj_pipe::Vm_access_pairedinline
iterator typedefvdj_pipe::Value_map
name(const Val_id vid) const vdj_pipe::Value_mapinline
operator[](const Val_id vid) const vdj_pipe::Value_mapinline
operator[](const Val_id vid)vdj_pipe::Value_mapinline
qual_type typedefvdj_pipe::Vm_access_paired
quality(const Val_id qual_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const vdj_pipe::Value_mapinlineprotected
quality_fwd() const vdj_pipe::Vm_access_pairedinline
quality_fwd(const bool trim) const vdj_pipe::Vm_access_pairedinline
quality_fwd(qual_type const &qual)vdj_pipe::Vm_access_pairedinline
quality_path_fwd() const vdj_pipe::Vm_access_pairedinline
quality_path_fwd(std::string const &s)vdj_pipe::Vm_access_pairedinline
quality_path_rev() const vdj_pipe::Vm_access_pairedinline
quality_path_rev(std::string const &s)vdj_pipe::Vm_access_pairedinline
quality_rev() const vdj_pipe::Vm_access_pairedinline
quality_rev(const bool trim, const bool reverse) const vdj_pipe::Vm_access_pairedinline
quality_rev(qual_type const &qual)vdj_pipe::Vm_access_pairedinline
read_count() const vdj_pipe::Value_mapinline
read_count_incr()vdj_pipe::Value_mapinline
read_count_reset()vdj_pipe::Value_mapinline
read_id() const vdj_pipe::Value_mapinline
read_id(std::string const &id)vdj_pipe::Value_mapinline
read_id_nothrow() const vdj_pipe::Value_mapinline
seq_file_name() const vdj_pipe::Value_mapinline
seq_file_name(std::string const &fn)vdj_pipe::Value_mapinline
seq_type typedefvdj_pipe::Vm_access_paired
sequence(const Val_id seq_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const vdj_pipe::Value_mapinlineprotected
sequence_fwd() const vdj_pipe::Vm_access_pairedinline
sequence_fwd(const bool trim) const vdj_pipe::Vm_access_pairedinline
sequence_fwd(seq_type const &seq)vdj_pipe::Vm_access_pairedinline
sequence_path_fwd() const vdj_pipe::Vm_access_pairedinline
sequence_path_fwd(std::string const &s)vdj_pipe::Vm_access_pairedinline
sequence_path_rev() const vdj_pipe::Vm_access_pairedinline
sequence_path_rev(std::string const &s)vdj_pipe::Vm_access_pairedinline
sequence_rev() const vdj_pipe::Vm_access_pairedinline
sequence_rev(const bool trim, const bool reverse) const vdj_pipe::Vm_access_pairedinline
sequence_rev(seq_type const &seq)vdj_pipe::Vm_access_pairedinline
size() const vdj_pipe::Value_mapinline
str_nothrow(const Val_id id) const vdj_pipe::Value_mapinline
value(std::string const &name) const vdj_pipe::Value_mapinline
value(const Val_id id) const vdj_pipe::Value_mapinline
value_id(std::string const &name) const vdj_pipe::Value_mapinline
Value_map()vdj_pipe::Value_mapinline
value_ptr(std::string const &name) const vdj_pipe::Value_mapinline
value_ptr(const Val_id id) const vdj_pipe::Value_mapinline
Vm_access_paired()vdj_pipe::Vm_access_pairedinline