vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Vm_access_single Member List

This is the complete list of members for vdj_pipe::Vm_access_single, including all inherited members.

begin() const vdj_pipe::Value_mapinline
clear_values()vdj_pipe::Value_mapinline
const_iterator typedefvdj_pipe::Value_map
description() const vdj_pipe::Vm_access_singleinline
description(std::string const &descr)vdj_pipe::Vm_access_singleinline
end() const vdj_pipe::Value_mapinline
file_read_count() const vdj_pipe::Value_mapinline
file_read_count_incr()vdj_pipe::Value_mapinline
file_read_count_reset()vdj_pipe::Value_mapinline
find_id(std::string const &name) const vdj_pipe::Value_mapinline
ids_vdj_pipe::Vm_access_singleprivate
insert_name(std::string const &name)vdj_pipe::Value_mapinline
insert_new_name(std::string const &name)vdj_pipe::Value_mapinline
interval() const vdj_pipe::Vm_access_singleinline
interval(sequence_interval const &si)vdj_pipe::Vm_access_singleinline
is_reverse() const vdj_pipe::Vm_access_singleinline
iterator typedefvdj_pipe::Value_map
name(const Val_id vid) const vdj_pipe::Value_mapinline
operator[](const Val_id vid) const vdj_pipe::Value_mapinline
operator[](const Val_id vid)vdj_pipe::Value_mapinline
qual_type typedefvdj_pipe::Vm_access_single
quality() const vdj_pipe::Vm_access_singleinline
quality(qual_type const &qual)vdj_pipe::Vm_access_singleinline
quality(const bool trimmed, const bool reverse_compl) const vdj_pipe::Vm_access_singleinline
vdj_pipe::Value_map::quality(const Val_id qual_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const vdj_pipe::Value_mapinlineprotected
quality_path() const vdj_pipe::Vm_access_singleinline
quality_path(std::string const &s)vdj_pipe::Vm_access_singleinline
read_count() const vdj_pipe::Value_mapinline
read_count_incr()vdj_pipe::Value_mapinline
read_count_reset()vdj_pipe::Value_mapinline
read_id() const vdj_pipe::Value_mapinline
read_id(std::string const &id)vdj_pipe::Value_mapinline
read_id_nothrow() const vdj_pipe::Value_mapinline
reset(Value_ids_single const &ids)vdj_pipe::Vm_access_singleinline
seq_file_name() const vdj_pipe::Value_mapinline
seq_file_name(std::string const &fn)vdj_pipe::Value_mapinline
seq_type typedefvdj_pipe::Vm_access_single
sequence() const vdj_pipe::Vm_access_singleinline
sequence(seq_type const &seq)vdj_pipe::Vm_access_singleinline
sequence(const bool trimmed, const bool reverse_compl) const vdj_pipe::Vm_access_singleinline
vdj_pipe::Value_map::sequence(const Val_id seq_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const vdj_pipe::Value_mapinlineprotected
sequence_path() const vdj_pipe::Vm_access_singleinline
sequence_path(std::string const &s)vdj_pipe::Vm_access_singleinline
set_empty()vdj_pipe::Vm_access_singleinline
set_reverse(const bool rev)vdj_pipe::Vm_access_singleinline
size() const vdj_pipe::Value_mapinline
str_nothrow(const Val_id id) const vdj_pipe::Value_mapinline
trim(sequence_interval const &si)vdj_pipe::Vm_access_singleinline
value(std::string const &name) const vdj_pipe::Value_mapinline
value(const Val_id id) const vdj_pipe::Value_mapinline
value_id(std::string const &name) const vdj_pipe::Value_mapinline
Value_map()vdj_pipe::Value_mapinline
value_ptr(std::string const &name) const vdj_pipe::Value_mapinline
value_ptr(const Val_id id) const vdj_pipe::Value_mapinline
Vm_access_single(Value_names::single_read_names const &names)vdj_pipe::Vm_access_singleinline
Vm_access_single(Value_map const &vm, Value_names::single_read_names const &names)vdj_pipe::Vm_access_singleinline
Vm_access_single(Value_map const &vm, Value_ids_single const &ids)vdj_pipe::Vm_access_singleinline