begin() const | vdj_pipe::Value_map | inline |
clear_values() | vdj_pipe::Value_map | inline |
const_iterator typedef | vdj_pipe::Value_map | |
description() const | vdj_pipe::Vm_access_single | inline |
description(std::string const &descr) | vdj_pipe::Vm_access_single | inline |
end() const | vdj_pipe::Value_map | inline |
file_read_count() const | vdj_pipe::Value_map | inline |
file_read_count_incr() | vdj_pipe::Value_map | inline |
file_read_count_reset() | vdj_pipe::Value_map | inline |
find_id(std::string const &name) const | vdj_pipe::Value_map | inline |
ids_ | vdj_pipe::Vm_access_single | private |
insert_name(std::string const &name) | vdj_pipe::Value_map | inline |
insert_new_name(std::string const &name) | vdj_pipe::Value_map | inline |
interval() const | vdj_pipe::Vm_access_single | inline |
interval(sequence_interval const &si) | vdj_pipe::Vm_access_single | inline |
is_reverse() const | vdj_pipe::Vm_access_single | inline |
iterator typedef | vdj_pipe::Value_map | |
name(const Val_id vid) const | vdj_pipe::Value_map | inline |
operator[](const Val_id vid) const | vdj_pipe::Value_map | inline |
operator[](const Val_id vid) | vdj_pipe::Value_map | inline |
qual_type typedef | vdj_pipe::Vm_access_single | |
quality() const | vdj_pipe::Vm_access_single | inline |
quality(qual_type const &qual) | vdj_pipe::Vm_access_single | inline |
quality(const bool trimmed, const bool reverse_compl) const | vdj_pipe::Vm_access_single | inline |
vdj_pipe::Value_map::quality(const Val_id qual_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const | vdj_pipe::Value_map | inlineprotected |
quality_path() const | vdj_pipe::Vm_access_single | inline |
quality_path(std::string const &s) | vdj_pipe::Vm_access_single | inline |
read_count() const | vdj_pipe::Value_map | inline |
read_count_incr() | vdj_pipe::Value_map | inline |
read_count_reset() | vdj_pipe::Value_map | inline |
read_id() const | vdj_pipe::Value_map | inline |
read_id(std::string const &id) | vdj_pipe::Value_map | inline |
read_id_nothrow() const | vdj_pipe::Value_map | inline |
reset(Value_ids_single const &ids) | vdj_pipe::Vm_access_single | inline |
seq_file_name() const | vdj_pipe::Value_map | inline |
seq_file_name(std::string const &fn) | vdj_pipe::Value_map | inline |
seq_type typedef | vdj_pipe::Vm_access_single | |
sequence() const | vdj_pipe::Vm_access_single | inline |
sequence(seq_type const &seq) | vdj_pipe::Vm_access_single | inline |
sequence(const bool trimmed, const bool reverse_compl) const | vdj_pipe::Vm_access_single | inline |
vdj_pipe::Value_map::sequence(const Val_id seq_id, const Val_id trim_id, const bool trimmed, const bool reverse_compl) const | vdj_pipe::Value_map | inlineprotected |
sequence_path() const | vdj_pipe::Vm_access_single | inline |
sequence_path(std::string const &s) | vdj_pipe::Vm_access_single | inline |
set_empty() | vdj_pipe::Vm_access_single | inline |
set_reverse(const bool rev) | vdj_pipe::Vm_access_single | inline |
size() const | vdj_pipe::Value_map | inline |
str_nothrow(const Val_id id) const | vdj_pipe::Value_map | inline |
trim(sequence_interval const &si) | vdj_pipe::Vm_access_single | inline |
value(std::string const &name) const | vdj_pipe::Value_map | inline |
value(const Val_id id) const | vdj_pipe::Value_map | inline |
value_id(std::string const &name) const | vdj_pipe::Value_map | inline |
Value_map() | vdj_pipe::Value_map | inline |
value_ptr(std::string const &name) const | vdj_pipe::Value_map | inline |
value_ptr(const Val_id id) const | vdj_pipe::Value_map | inline |
Vm_access_single(Value_names::single_read_names const &names) | vdj_pipe::Vm_access_single | inline |
Vm_access_single(Value_map const &vm, Value_names::single_read_names const &names) | vdj_pipe::Vm_access_single | inline |
Vm_access_single(Value_map const &vm, Value_ids_single const &ids) | vdj_pipe::Vm_access_single | inline |