vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Homopolymer_filter Member List

This is the complete list of members for vdj_pipe::Homopolymer_filter, including all inherited members.

delimiter() const vdj_pipe::detail::Step_baseinline
Filter_base(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)vdj_pipe::detail::Filter_baseprotected
finish()vdj_pipe::Homopolymer_filterinline
min_vdj_pipe::Homopolymer_filterprivate
nf_vdj_pipe::detail::Filter_baseprotected
pass(const bool b)vdj_pipe::detail::Filter_baseinlineprotected
pass_id_vdj_pipe::detail::Filter_baseprotected
pevdj_pipe::Homopolymer_filter
ptvdj_pipe::Homopolymer_filter
qual_type typedefvdj_pipe::detail::Step_base
reset_access(Value_ids_single const &ids)vdj_pipe::detail::Step_base_singleinline
run()vdj_pipe::Homopolymer_filter
seq_type typedefvdj_pipe::detail::Step_base
Step_base(boost::property_tree::ptree const &pt, Pipe_environment const &pe)vdj_pipe::detail::Step_base
Step_base_single(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe)vdj_pipe::detail::Step_base_singleinlineprotected
summary(std::ostream &os) const vdj_pipe::detail::Filter_base
VDJ_PIPE_KEYWORD_STRUCT(kwds,(passed_name))vdj_pipe::detail::Filter_baseprotected
VDJ_PIPE_STATIC_STRING_METHOD(comment,"discard reads that contain a homopolymer longer than minimal length") Homopolymer_filter(Vm_access_single const &vmavdj_pipe::Homopolymer_filter
vma_vdj_pipe::detail::Step_base_singleprotected
vma_type typedefvdj_pipe::detail::Step_base_single