Ambiguous_window_filter(Vm_access_single const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe) | vdj_pipe::Ambiguous_window_filter | |
delimiter() const | vdj_pipe::detail::Step_base | inline |
Filter_base(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe) | vdj_pipe::detail::Filter_base | protected |
finish() | vdj_pipe::Ambiguous_window_filter | inline |
max_ambiguous_ | vdj_pipe::Ambiguous_window_filter | private |
min_len_ | vdj_pipe::Ambiguous_window_filter | private |
nf_ | vdj_pipe::detail::Filter_base | protected |
nt_ | vdj_pipe::detail::Window_filter_base | protected |
pass(const bool b) | vdj_pipe::detail::Filter_base | inlineprotected |
pass_id_ | vdj_pipe::detail::Filter_base | protected |
qual_type typedef | vdj_pipe::detail::Step_base | |
reset_access(Value_ids_single const &ids) | vdj_pipe::detail::Step_base_single | inline |
run() | vdj_pipe::Ambiguous_window_filter | |
seq_type typedef | vdj_pipe::detail::Step_base | |
Step_base(boost::property_tree::ptree const &pt, Pipe_environment const &pe) | vdj_pipe::detail::Step_base | |
Step_base_single(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe) | vdj_pipe::detail::Step_base_single | inlineprotected |
summary(std::ostream &os) const | vdj_pipe::detail::Window_filter_base | |
trim(sequence_interval const &si) | vdj_pipe::detail::Window_filter_base | inlineprotected |
VDJ_PIPE_KEYWORD_STRUCT(kwds,(passed_name)) | vdj_pipe::detail::Filter_base | protected |
VDJ_PIPE_STATIC_STRING_METHOD(comment,"Truncate reads to bring number of ambiguous bases below maximum") VDJ_PIPE_STATIC_STRING_METHOD(description | vdj_pipe::Ambiguous_window_filter | |
vma_ | vdj_pipe::detail::Step_base_single | protected |
vma_type typedef | vdj_pipe::detail::Step_base_single | |
Window_filter_base(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe) | vdj_pipe::detail::Window_filter_base | inlineprotected |
zero | vdj_pipe::Ambiguous_window_filter | |