vdj_pipe
pipeline for processing DNA sequence data
vdj_pipe::Ambiguous_window_filter Member List

This is the complete list of members for vdj_pipe::Ambiguous_window_filter, including all inherited members.

Ambiguous_window_filter(Vm_access_single const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)vdj_pipe::Ambiguous_window_filter
delimiter() const vdj_pipe::detail::Step_baseinline
Filter_base(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)vdj_pipe::detail::Filter_baseprotected
finish()vdj_pipe::Ambiguous_window_filterinline
max_ambiguous_vdj_pipe::Ambiguous_window_filterprivate
min_len_vdj_pipe::Ambiguous_window_filterprivate
nf_vdj_pipe::detail::Filter_baseprotected
nt_vdj_pipe::detail::Window_filter_baseprotected
pass(const bool b)vdj_pipe::detail::Filter_baseinlineprotected
pass_id_vdj_pipe::detail::Filter_baseprotected
qual_type typedefvdj_pipe::detail::Step_base
reset_access(Value_ids_single const &ids)vdj_pipe::detail::Step_base_singleinline
run()vdj_pipe::Ambiguous_window_filter
seq_type typedefvdj_pipe::detail::Step_base
Step_base(boost::property_tree::ptree const &pt, Pipe_environment const &pe)vdj_pipe::detail::Step_base
Step_base_single(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment const &pe)vdj_pipe::detail::Step_base_singleinlineprotected
summary(std::ostream &os) const vdj_pipe::detail::Window_filter_base
trim(sequence_interval const &si)vdj_pipe::detail::Window_filter_baseinlineprotected
VDJ_PIPE_KEYWORD_STRUCT(kwds,(passed_name))vdj_pipe::detail::Filter_baseprotected
VDJ_PIPE_STATIC_STRING_METHOD(comment,"Truncate reads to bring number of ambiguous bases below maximum") VDJ_PIPE_STATIC_STRING_METHOD(descriptionvdj_pipe::Ambiguous_window_filter
vma_vdj_pipe::detail::Step_base_singleprotected
vma_type typedefvdj_pipe::detail::Step_base_single
Window_filter_base(vma_type const &vma, boost::property_tree::ptree const &pt, Pipe_environment &pe)vdj_pipe::detail::Window_filter_baseinlineprotected
zerovdj_pipe::Ambiguous_window_filter