vdj_pipe
pipeline for processing DNA sequence data
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score_type :
vdj_pipe::Best_match_pair< ID, Score >
self_type :
vdj_pipe::detail::Base_id< Super, Val >
,
vdj_pipe::detail::Id_bimap< Id, Obj >
,
vdj_pipe::detail::Id_map< Id, Obj, Stor >
,
vdj_pipe::detail::Vector_set< T, Alloc >
,
vdj_pipe::Id_iterator< Id >
,
vdj_pipe::Seq_fls< N, S >
seq_index :
vdj_pipe::Seq_store
seq_iterator :
vdj_pipe::File_ostream_queue
seq_map :
vdj_pipe::gdst::Gdst
,
vdj_pipe::Group_unique
,
vdj_pipe::match::Match_combination
,
vdj_pipe::Seq_map_aligned
,
vdj_pipe::Seq_map_full
,
vdj_pipe::Seq_map_short
,
vdj_pipe::Seq_store
seq_map_ptr :
vdj_pipe::gdst::Gdst
,
vdj_pipe::Seq_store
seq_map_vector :
vdj_pipe::match::Match_combination
seq_mi_t :
vdj_pipe::Seq_store
seq_to_info :
vdj_pipe::Seq_store
seq_type :
vdj_pipe::detail::Step_base
,
vdj_pipe::gdst::Gdst
,
vdj_pipe::Seq_map_full
,
vdj_pipe::Seq_map_short
,
vdj_pipe::Vm_access_paired
,
vdj_pipe::Vm_access_single
sequence :
vdj_pipe::match::Match_combination
,
vdj_pipe::match::Match_element_aligned
,
vdj_pipe::match::Match_element_ambiguous
,
vdj_pipe::match::Match_element_battery
,
vdj_pipe::match::Match_element_positional
,
vdj_pipe::match::Match_element_short
,
vdj_pipe::match::Match_element_visitor
,
vdj_pipe::Merge_result
,
vdj_pipe::Parser_fasta
,
vdj_pipe::Parser_fastq
,
vdj_pipe::Seq_qual_record
,
vdj_pipe::Seq_record
single_read_names :
vdj_pipe::Value_names
size_index :
vdj_pipe::Seq_store
size_iterator :
vdj_pipe::Read_info_store
,
vdj_pipe::Seq_store
size_range :
vdj_pipe::Read_info_store
,
vdj_pipe::Seq_store
size_type :
vdj_pipe::detail::Vector_set< T, Alloc >
stack :
vdj_pipe::gdst::Depth_iter
step :
vdj_pipe::Wrap< Step >
step_ptr :
vdj_pipe::test::Step_harness< Step >
step_type :
vdj_pipe::Pipeline_input< Config >
step_variant :
vdj_pipe::step::Step_builder_registry< Config >
step_vector :
vdj_pipe::Pipeline< Config >
,
vdj_pipe::Pipeline_input< Config >
stor :
vdj_pipe::gdst::Children
stor_t :
vdj_pipe::detail::Vector_set< T, Alloc >
store_t :
vdj_pipe::Read_ginfo_store
str1_t :
vdj_pipe::base_exception
str2_t :
vdj_pipe::base_exception
str3_t :
vdj_pipe::base_exception
sub_seq_set :
vdj_pipe::Seq_store
suffix_tree :
vdj_pipe::Seq_map_aligned
super_seq_set :
vdj_pipe::Seq_store
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