- s -

• s2i_ : vdj_pipe::Seq_store
• s_ : vdj_pipe::gdst::Depth_iter
• same_size_ : vdj_pipe::detail::Seq_props
• sb_ : vdj_pipe::gdst::Branch
• score1_ : vdj_pipe::Best_match_pair< ID, Score >
• score2_ : vdj_pipe::Best_match_pair< ID, Score >
• score_ : vdj_pipe::Merge_result , vdj_pipe::Seq_map_aligned::Match
• score_id_ : vdj_pipe::Merge_paired
• score_name_ : vdj_pipe::match::Element_proto
• score_val_id_ : vdj_pipe::detail::External_mid_base , vdj_pipe::match::Match_element_aligned , vdj_pipe::match::Match_element_ambiguous , vdj_pipe::match::Match_element_short
• scoring_matrix_ : vdj_pipe::detail::External_mid_base , vdj_pipe::match::Match_element_ambiguous , vdj_pipe::match::Match_element_short
• seq_ : vdj_pipe::gdst::Common_subseq , vdj_pipe::match::Match_element_visitor , vdj_pipe::Merge_result , vdj_pipe::Seq_entry , vdj_pipe::Seq_file_entry , vdj_pipe::Seq_match , vdj_pipe::Seq_qual_record , vdj_pipe::Seq_record , vdj_pipe::Unambiguous_interval_iter
• seq_file_ : vdj_pipe::Read_info
• seq_frw_ : vdj_pipe::anonymous_namespace{pipe_paired_emid_read.cpp}::Four_file_ids
• seq_len_ : vdj_pipe::gdst::Gdst_stats
• seq_rev_ : vdj_pipe::anonymous_namespace{pipe_paired_emid_read.cpp}::Four_file_ids , vdj_pipe::Seq_file_entry
• seqs_ : vdj_pipe::match::Element_proto , vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short
• si_ : vdj_pipe::match::Match_element_visitor , vdj_pipe::Seq_map_aligned::Match , vdj_pipe::Seq_store
• sid_ : vdj_pipe::gdst::Ukkonen_inserter
• skip_empty_ : vdj_pipe::File_ostream_variant , vdj_pipe::Write_seq
• sl_ : vdj_pipe::gdst::Branch
• sm_ : vdj_pipe::match::Match_element_ambiguous , vdj_pipe::match::Match_element_short , vdj_pipe::Seq_store
• smf_ : vdj_pipe::detail::External_mid_base
• smm_ : vdj_pipe::Seq_file_map
• sms_ : vdj_pipe::detail::External_mid_base
• smv_ : vdj_pipe::match::Match_combination
• sp_ : vdj_pipe::match::Element_proto
• sqm_ : vdj_pipe::Seq_file_map
• ss_ : vdj_pipe::Find_shared , vdj_pipe::gdst::Gdst , vdj_pipe::Group_unique
• st_ : vdj_pipe::gdst::Ukkonen_inserter , vdj_pipe::Group_unique , vdj_pipe::Seq_map_aligned
• start_ : vdj_pipe::gdst::Common_subseq
• start_defined_ : vdj_pipe::match::Element_proto
• state_ : vdj_pipe::Parser_fastq
• step_ : vdj_pipe::Apply_many , vdj_pipe::Apply_one , vdj_pipe::test::Step_harness< Step >
• steps_ : vdj_pipe::Pipe_environment
• stor_ : vdj_pipe::detail::Getter< Stor, Id, Obj, Result, MemFunPtr >
• str_ : vdj_pipe::detail::Parser_line
• suff_ : vdj_pipe::gdst::Ukkonen_inserter
• summ_ : vdj_pipe::Find_shared
• summary_output_path_ : vdj_pipe::Pipe_environment
• sv_ : vdj_pipe::Pipeline< Config > , vdj_pipe::Queable_ofstream
• svv_ : vdj_pipe::Step_variant_store
• sz_ : vdj_pipe::File_ostream_queue