vdj_pipe
pipeline for processing DNA sequence data
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- m -
m_ :
vdj_pipe::detail::Id_bimap< Id, Obj >::Equal_id
,
vdj_pipe::detail::Id_bimap< Id, Obj >::Equal_obj< ObjCompat >
,
vdj_pipe::detail::Id_bimap< Id, Obj >::Hash_id
,
vdj_pipe::Group_unique
,
vdj_pipe::Read_ginfo_store
map_ :
vdj_pipe::detail::Id_bimap< Id, Obj >
,
vdj_pipe::Histogram_step
,
vdj_pipe::Seq_file_entry
,
vdj_pipe::Seq_file_map
,
vdj_pipe::Value_map
MASK :
vdj_pipe::Seq_fls< N, S >
max_ :
vdj_pipe::Length_filter
max_ambiguous_ :
vdj_pipe::Ambiguous_window_filter
MAX_CHARS :
vdj_pipe::Seq_fls< N, S >
max_file_reads_ :
vdj_pipe::Command_line_options
,
vdj_pipe::Pipe_environment
max_len_ :
vdj_pipe::Seq_map_full
max_reads_ :
vdj_pipe::Command_line_options
,
vdj_pipe::Pipe_environment
max_size_ :
vdj_pipe::detail::Seq_props
mb_ :
vdj_pipe::Match_step
md_ :
vdj_pipe::gdst::Ukkonen_inserter
me_deps_ :
vdj_pipe::match::Match_element_battery
mev_ :
vdj_pipe::match::Match_combination
,
vdj_pipe::match::Match_element_battery
mid_ :
vdj_pipe::Group_unique
,
vdj_pipe::Read_ginfo
,
vdj_pipe::Seq_file_entry
mid_frw_ :
vdj_pipe::anonymous_namespace{pipe_paired_emid_read.cpp}::Four_file_ids
mid_rev_ :
vdj_pipe::anonymous_namespace{pipe_paired_emid_read.cpp}::Four_file_ids
,
vdj_pipe::Seq_file_entry
mid_size_ :
vdj_pipe::Seq_map_short
min_ :
vdj_pipe::Average_quality_filter
,
vdj_pipe::Get_match_length
,
vdj_pipe::Homopolymer_filter
,
vdj_pipe::Length_filter
,
vdj_pipe::Match_fraction_length
,
vdj_pipe::Match_ignore_ends
,
vdj_pipe::Match_min_length
,
vdj_pipe::Min_quality_filter
min_d_ :
vdj_pipe::gdst::Match
min_duplicates_ :
vdj_pipe::Find_shared
min_len_ :
vdj_pipe::Ambiguous_window_filter
,
vdj_pipe::Average_quality_window_filter
,
vdj_pipe::Min_quality_window_filter
,
vdj_pipe::Seq_map_full
,
vdj_pipe::Unambiguous_interval_iter
min_match_len_ :
vdj_pipe::match::Match_element_aligned
min_match_length_ :
vdj_pipe::match::Element_proto
min_qual_ :
vdj_pipe::Min_quality_window_filter
min_qual_l_ :
vdj_pipe::Average_quality_window_filter
min_score_ :
vdj_pipe::detail::External_mid_base
,
vdj_pipe::match::Element_proto
,
vdj_pipe::match::Match_element_aligned
,
vdj_pipe::match::Match_element_ambiguous
,
vdj_pipe::match::Match_element_short
,
vdj_pipe::Merge_paired
min_size_ :
vdj_pipe::detail::Seq_props
mismatch_ :
vdj_pipe::gdst::Match
,
vdj_pipe::gdst::Pattern_iter
mm3_ :
vdj_pipe::Sequence_bstats
,
vdj_pipe::Sequence_gstats
mm5_ :
vdj_pipe::Sequence_bstats
,
vdj_pipe::Sequence_gstats
mm_ :
vdj_pipe::detail::Inserter
,
vdj_pipe::Step_registry
mqh_ :
vdj_pipe::Qual_stats
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