This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 12345]

Cvdj_pipe::Apply_many	Apply enclosed processing step multiple times to sequence reads of specified kind: forward, reverse, or merged
Cvdj_pipe::Apply_one	Apply enclosed processing step once to a sequence read of specified kind: forward, reverse, or merged
Cvdj_pipe::step::Apply_to_maker
Cvdj_pipe::detail::Base_id< Super, Val >
Cvdj_pipe::Best_match_pair< ID, Score >
Cvdj_pipe::Blank
Cvdj_pipe::Blank_step
Cvdj_pipe::gdst::Branch
Cvdj_pipe::gdst::Children
Cvdj_pipe::Command_line_options
Cvdj_pipe::gdst::Common_subseq	Common subsequence
Cvdj_pipe::Config_paired_emid_reads
Cvdj_pipe::Config_paired_reads
Cvdj_pipe::Config_single_reads
Cvdj_pipe::gdst::Depth_iter
Cvdj_pipe::detail::Equal_string_ref
►Cexception
►Cvdj_pipe::base_exception
Cvdj_pipe::Command_line_options::Err
Cvdj_pipe::detail::Parser_line::Err
Cvdj_pipe::detail::Step_base::Err
Cvdj_pipe::File::Err
Cvdj_pipe::File_istream::Err
Cvdj_pipe::File_ostream::Err
Cvdj_pipe::File_ostream_queue::Err
Cvdj_pipe::File_ostream_variant::Err
Cvdj_pipe::gdst::Gdst::Err
Cvdj_pipe::Get_match_length::Err
Cvdj_pipe::Input_manager::Err
Cvdj_pipe::Match_fraction_length::Err
Cvdj_pipe::Output_manager::Err
Cvdj_pipe::Pipe_environment::Err
Cvdj_pipe::Pipe_paired_emid_read::Err
Cvdj_pipe::Pipe_paired_read::Err
Cvdj_pipe::Pipe_single_read::Err
Cvdj_pipe::Queable_ofstream::Err
Cvdj_pipe::Read_info_store::Err
Cvdj_pipe::Seq_file_entry::Err
Cvdj_pipe::Seq_file_map::Err
Cvdj_pipe::step::Apply_to_maker::Err
Cvdj_pipe::Value_map::Err
Cvdj_pipe::Variable_path::Err
Cvdj_pipe::Vm_access_paired::Err
Cvdj_pipe::Vm_access_single::Err
►Cstd::exception	STL class
Cvdj_pipe::base_exception
►Cvdj_pipe::detail::External_mid_base
Cvdj_pipe::External_mid_infile	Look for external MIDs in separate files
Cvdj_pipe::External_mid_inline	Look for external MIDs in FASTA/Q description lines
►Cvdj_pipe::File
►Cvdj_pipe::File_input	File target is supposed to exist at construction time
Cvdj_pipe::Seq_file
►Cvdj_pipe::File_output	File target is created if needed at construction time
Cvdj_pipe::File_ostream
Cvdj_pipe::File_istream
Cvdj_pipe::File_ostream_queue	Stack of recently used output file streams
Cvdj_pipe::File_ostream_variant	Select output file based on variables in value map
Cvdj_pipe::step::Find_maker< Step >
Cvdj_pipe::step::Find_maker< Apply_many >
Cvdj_pipe::step::Find_maker< Apply_one >
Cvdj_pipe::gdst::Gdst	Generalized DNA suffix tree
Cvdj_pipe::gdst::Gdst_stats
Cvdj_pipe::detail::Getter< Stor, Id, Obj, Result, MemFunPtr >	Extract object by its ID and apply member function
Cvdj_pipe::Histogram_1d	Simple unsigned integer-based histogram
Cvdj_pipe::detail::Id_bimap< Id, Obj >
Cvdj_pipe::detail::Id_bimap< Id, std::string >
Cvdj_pipe::detail::Id_bimap< Mapped_id, val_vector >
Cvdj_pipe::detail::Id_map< Id, Obj, Stor >
Cvdj_pipe::detail::Id_map< Branch_id, Branch >
Cvdj_pipe::detail::Id_map< Children_id, Children >
Cvdj_pipe::detail::Id_map< Id, Val >
Cvdj_pipe::detail::Id_map< Leaf_id, Leaf >
Cvdj_pipe::detail::Id_map< Read_id, Read_info >
Cvdj_pipe::detail::Id_map< Read_id, super_seq_set >
Cvdj_pipe::detail::Id_map< Seq_id, sub_seq_set >
Cvdj_pipe::Input_manager
Cvdj_pipe::detail::Interval_checking_policy< T >
Cvdj_pipe::detail::Interval_checking_policy< int >
►Citerator_facade
Cvdj_pipe::Id_iterator< Path_id >
Cvdj_pipe::Id_iterator< Id >
Cvdj_pipe::Lib_info	Library info
Cvdj_pipe::step::Maker< Step >
Cvdj_pipe::gdst::Match	Results of matching pattern to suffix tree
Cvdj_pipe::Merge_result
Cboost::multi_array< typename, size_t, typename >
Cboost::multi_array< std::size_t, 2 >
Cvdj_pipe::detail::Named_value_map< Id, Val >	Store values mapped against name strings and value IDs
►Cnoncopyable
Cvdj_pipe::Read_info_store	Store sequence-related information
Cvdj_pipe::Output_manager
►Cvdj_pipe::detail::Parser_line	Basic line-based parser; use to derive other parsers
Cvdj_pipe::Parser_fasta
Cvdj_pipe::Parser_fastq	Parser for FASTQ files
Cvdj_pipe::Parser_qual
Cvdj_pipe::gdst::Pattern_iter	Navigate suffix tree according to pattern
Cvdj_pipe::Pipe_environment
Cvdj_pipe::Pipe_paired_emid_read	Process paired reads with external MIDs
Cvdj_pipe::Pipe_paired_read	Process paired reads with external MIDs
Cvdj_pipe::Pipe_single_read
Cvdj_pipe::Pipeline< Config >
Cvdj_pipe::Pipeline_input< Config >
►Cpredicate_facade
Cvdj_pipe::Is_ambiguous
Cvdj_pipe::Queable_ofstream
Cvdj_pipe::detail::Queable_ofstream_types
Cvdj_pipe::Read_info
Cvdj_pipe::Seq_entry
Cvdj_pipe::Seq_file_entry
Cvdj_pipe::Seq_file_map
Cvdj_pipe::Seq_fls< N, S >	Store short sequence in an integer
Cvdj_pipe::Seq_match
►Cvdj_pipe::Seq_meta
Cvdj_pipe::Qual_record
Cvdj_pipe::Seq_qual_record
Cvdj_pipe::Seq_record
Cvdj_pipe::Seq_pos< Id >
Cvdj_pipe::Seq_store	Store sequence and related information
►Cstatic_visitor
Cvdj_pipe::detail::Type_name
Cvdj_pipe::Finish_visitor
Cvdj_pipe::Run_visitor
Cvdj_pipe::Summary_visitor
Cvdj_pipe::Summary_visitor2
►Cvdj_pipe::detail::Step_base
►Cvdj_pipe::detail::Step_base_paired
Cvdj_pipe::Merge_paired
►Cvdj_pipe::detail::Step_base_paired_emid
Cvdj_pipe::External_mid_infile	Look for external MIDs in separate files
►Cvdj_pipe::detail::Step_base_single
Cvdj_pipe::Composition_stats
►Cvdj_pipe::detail::Filter_base
Cvdj_pipe::Average_quality_filter
Cvdj_pipe::Character_filter
►Cvdj_pipe::detail::Window_filter_base
Cvdj_pipe::Ambiguous_window_filter
Cvdj_pipe::Average_quality_window_filter
Cvdj_pipe::Length_filter
Cvdj_pipe::Min_quality_window_filter
Cvdj_pipe::Homopolymer_filter
Cvdj_pipe::Min_quality_filter
Cvdj_pipe::External_mid_inline	Look for external MIDs in FASTA/Q description lines
Cvdj_pipe::Find_shared
Cvdj_pipe::Match_step
Cvdj_pipe::Qual_stats
Cvdj_pipe::Write_seq
Cvdj_pipe::Histogram_step
Cvdj_pipe::Write_value
Cvdj_pipe::Step_variant_store
►Ctype
Cvdj_pipe::Type_index< T >
Cvdj_pipe::Unambiguous_interval_iter
►Cunary_function
Cvdj_pipe::Get_match_length	Set a fraction of sequence length to match
Cvdj_pipe::Identity< T >	Why is it not in STL?
Cvdj_pipe::Match_fraction_length	Set a fraction of sequence length to match
Cvdj_pipe::Match_full_length	Require full sequence to match
Cvdj_pipe::Match_ignore_ends	Set a minimal sequence length to match allowing for some mismatch at ends
Cvdj_pipe::Match_min_length	Set a minimal sequence length to match
Cvdj_pipe::Value_ids_emid	Provides access to standard eMID values
Cvdj_pipe::Value_ids_paired	Provides access to standard values for paired read pipeline
Cvdj_pipe::Value_ids_single	Provides access to standard values for single read pipeline
►Cvdj_pipe::Value_map	Store values mapped against name strings and value IDs
►Cvdj_pipe::Vm_access_paired	Access to value map for paired read pipeline and processing steps
Cvdj_pipe::Vm_access_paired_emid	Access to value map for paired eMID read pipeline and processing steps
Cvdj_pipe::Vm_access_single
Cvdj_pipe::Value_names
Cvdj_pipe::Variable_path
►Cstd::vector< T >	STL class
Cvdj_pipe::Quality
Cvdj_pipe::detail::Vector_set< T, Alloc >	Collection of unique objects stored in an ordered vector
Cvdj_pipe::detail::Vector_set< id_type >
►Cvdj_pipe::detail::Vector_set< Seq_id >
Cvdj_pipe::gdst::Leaf	Store suffixes Each leaf is attached to a branch and stores suffixes that have the length of the branch' index. Since the length of the suffixes is known, only the sequence ID is stored
Cvdj_pipe::detail::Vector_set< vdj_pipe::Seq_pos >