vdj_pipe
pipeline for processing DNA sequence data
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make() :
vdj_pipe::step::Apply_to_maker
,
vdj_pipe::step::Maker< Step >
,
vdj_pipe::step::Step_builder_registry< Config >::Insert
,
vdj_pipe::step::Step_builder_registry< Config >
make_dir() :
vdj_pipe::Output_manager
make_fisb() :
vdj_pipe::File_istream
make_fosb() :
vdj_pipe::File_ostream
make_header() :
vdj_pipe::Write_value
make_ids() :
vdj_pipe::step::Apply_to_maker
make_impl() :
vdj_pipe::step::Step_builder_registry< Config >
make_path() :
vdj_pipe::Queable_ofstream
maps_from() :
vdj_pipe::Seq_store
maps_to() :
vdj_pipe::Seq_store
Match() :
vdj_pipe::gdst::Match
,
vdj_pipe::Seq_map_aligned::Match
Match_combination() :
vdj_pipe::match::Match_combination
Match_element_aligned() :
vdj_pipe::match::Match_element_aligned
Match_element_ambiguous() :
vdj_pipe::match::Match_element_ambiguous
Match_element_battery() :
vdj_pipe::match::Match_element_battery
Match_element_factory() :
vdj_pipe::match::Match_element_factory
Match_element_positional() :
vdj_pipe::match::Match_element_positional
Match_element_short() :
vdj_pipe::match::Match_element_short
Match_element_visitor() :
vdj_pipe::match::Match_element_visitor
Match_fraction_length() :
vdj_pipe::Match_fraction_length
Match_ignore_ends() :
vdj_pipe::Match_ignore_ends
Match_min_length() :
vdj_pipe::Match_min_length
Match_step() :
vdj_pipe::Match_step
max_file_reads() :
vdj_pipe::Command_line_options
,
vdj_pipe::Pipe_environment
max_id() :
vdj_pipe::detail::Id_bimap< Id, Obj >
,
vdj_pipe::detail::Id_map< Id, Obj, Stor >
,
vdj_pipe::Seq_map_aligned
,
vdj_pipe::Seq_map_full
,
vdj_pipe::Seq_map_short
max_len() :
vdj_pipe::Seq_map_full
max_reads() :
vdj_pipe::Command_line_options
,
vdj_pipe::Pipe_environment
Merge_paired() :
vdj_pipe::Merge_paired
merged() :
vdj_pipe::Value_names
Meta() :
vdj_pipe::Step_registry::Meta
mid() :
vdj_pipe::Seq_file_entry
mid2seq() :
vdj_pipe::Seq_file_map
mid_rev() :
vdj_pipe::Seq_file_entry
mid_size() :
vdj_pipe::detail::External_mid_base
min_id() :
vdj_pipe::detail::Id_bimap< Id, Obj >
,
vdj_pipe::detail::Id_map< Id, Obj, Stor >
min_len() :
vdj_pipe::Seq_map_full
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