vdj_pipe
pipeline for processing DNA sequence data
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Pair() :
vdj_pipe::Seq_file_map::Pair
parse() :
vdj_pipe::match::Cut_proto
parse_csv_file() :
vdj_pipe::match::Element_proto
parse_position() :
vdj_pipe::match::Element_proto
Parser_fasta() :
vdj_pipe::Parser_fasta
Parser_fastq() :
vdj_pipe::Parser_fastq
Parser_line() :
vdj_pipe::detail::Parser_line
Parser_qual() :
vdj_pipe::Parser_qual
pass() :
vdj_pipe::detail::Filter_base
path() :
vdj_pipe::File
,
vdj_pipe::Input_manager
,
vdj_pipe::Output_manager
paths() :
vdj_pipe::anonymous_namespace{pipe_paired_emid_read.cpp}::Four_file_ids
pattern_char() :
vdj_pipe::gdst::Pattern_iter
Pattern_iter() :
vdj_pipe::gdst::Pattern_iter
pe() :
vdj_pipe::Pipe_paired_emid_read
,
vdj_pipe::Pipe_paired_read
,
vdj_pipe::Pipe_single_read
Pipe_environment() :
vdj_pipe::Pipe_environment
Pipe_paired_emid_read() :
vdj_pipe::Pipe_paired_emid_read
Pipe_paired_read() :
vdj_pipe::Pipe_paired_read
Pipe_single_read() :
vdj_pipe::Pipe_single_read
Pipeline() :
vdj_pipe::Pipeline< Config >
pop_back() :
vdj_pipe::detail::Vector_set< T, Alloc >
pos2id() :
vdj_pipe::detail::Id_bimap< Id, Obj >
,
vdj_pipe::detail::Id_map< Id, Obj, Stor >
pos_inf() :
vdj_pipe::detail::Interval_checking_policy< int >
position() :
vdj_pipe::match::Cut_proto
,
vdj_pipe::match::Relative_interval
print() :
vdj_pipe::Histogram_1d
,
vdj_pipe::Lib_info
,
vdj_pipe::Seq_fls< N, S >
,
vdj_pipe::Sequence_bstats
,
vdj_pipe::Sequence_gstats
print_header() :
vdj_pipe::Sequence_bstats
,
vdj_pipe::Sequence_gstats
print_help() :
vdj_pipe::Command_line_options
print_info() :
vdj_pipe::Command_line_options
print_summary() :
vdj_pipe::Pipe_environment
print_usage() :
vdj_pipe::Command_line_options
print_version() :
vdj_pipe::Command_line_options
,
vdj_pipe::Lib_info
process_fasta_qual() :
vdj_pipe::Pipe_paired_emid_read
,
vdj_pipe::Pipe_paired_read
,
vdj_pipe::Pipe_single_read
process_fastq() :
vdj_pipe::Pipe_paired_emid_read
,
vdj_pipe::Pipe_paired_read
,
vdj_pipe::Pipe_single_read
process_more() :
vdj_pipe::Pipe_environment
process_read() :
vdj_pipe::Pipe_environment
,
vdj_pipe::Pipeline< Config >
push_back() :
vdj_pipe::Step_variant_store
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