- s -

• score1() : vdj_pipe::Best_match_pair< ID, Score >
• score2() : vdj_pipe::Best_match_pair< ID, Score >
• seek_line() : vdj_pipe::detail::Parser_line
• seq() : vdj_pipe::Seq_map_aligned , vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short
• seq2mid() : vdj_pipe::Seq_file_map
• seq2qual() : vdj_pipe::Seq_file_map
• Seq_entry() : vdj_pipe::Seq_entry
• seq_file() : vdj_pipe::Read_info
• Seq_file() : vdj_pipe::Seq_file
• Seq_file_entry() : vdj_pipe::Seq_file_entry
• Seq_file_map() : vdj_pipe::Seq_file_map
• seq_file_name() : vdj_pipe::Value_map
• Seq_fls() : vdj_pipe::Seq_fls< N, S >
• seq_id() : vdj_pipe::Seq_map_aligned
• seq_index_init() : vdj_pipe::Seq_store
• Seq_map_aligned() : vdj_pipe::Seq_map_aligned
• Seq_map_full() : vdj_pipe::Seq_map_full
• Seq_map_short() : vdj_pipe::Seq_map_short
• Seq_pos() : vdj_pipe::Seq_pos< Id >
• Seq_props() : vdj_pipe::detail::Seq_props
• seq_rev() : vdj_pipe::Seq_file_entry
• seq_size() : vdj_pipe::Seq_map_short
• Seq_store() : vdj_pipe::Seq_store
• seq_string() : vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short
• sequence() : vdj_pipe::Seq_entry , vdj_pipe::Seq_file_entry , vdj_pipe::Value_ids_single , vdj_pipe::Value_map , vdj_pipe::Vm_access_single
• Sequence_bstats() : vdj_pipe::Sequence_bstats
• sequence_fwd() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• Sequence_gstats() : vdj_pipe::Sequence_gstats
• sequence_map() : vdj_pipe::gdst::Gdst , vdj_pipe::Seq_store
• sequence_path() : vdj_pipe::Value_ids_single , vdj_pipe::Vm_access_single
• sequence_path_fwd() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• sequence_path_rev() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• sequence_rev() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• set() : vdj_pipe::Seq_fls< N, S >
• set_active_node() : vdj_pipe::gdst::Ukkonen_inserter
• set_branch_sl() : vdj_pipe::gdst::Ukkonen_inserter
• set_empty() : vdj_pipe::Vm_access_single
• set_interval() : vdj_pipe::match::Match_element_visitor
• set_leaf_sl() : vdj_pipe::gdst::Ukkonen_inserter
• set_meta() : vdj_pipe::detail::Parser_line
• set_mid() : vdj_pipe::Seq_file_map
• set_paired() : vdj_pipe::Seq_file_map
• set_path_input() : vdj_pipe::Command_line_options
• set_path_output() : vdj_pipe::Command_line_options
• set_reverse() : vdj_pipe::Vm_access_single
• set_seq_qual() : vdj_pipe::Seq_file_map
• set_stamp_flag() : vdj_pipe::Lib_info
• single() : vdj_pipe::Value_names
• size() : vdj_pipe::detail::Id_bimap< Id, Obj > , vdj_pipe::detail::Id_map< Id, Obj, Stor > , vdj_pipe::detail::Named_value_map< Id, Val > , vdj_pipe::detail::Vector_set< T, Alloc > , vdj_pipe::File_ostream_queue , vdj_pipe::File_ostream_variant , vdj_pipe::gdst::Gdst , vdj_pipe::Input_manager , vdj_pipe::match::Match_element_battery , vdj_pipe::Pipeline< Config > , vdj_pipe::Read_ginfo_store , vdj_pipe::Read_info , vdj_pipe::Read_info_store , vdj_pipe::Seq_entry , vdj_pipe::Seq_file_map , vdj_pipe::Seq_fls< N, S > , vdj_pipe::Seq_map_aligned , vdj_pipe::Seq_store , vdj_pipe::Value_map , vdj_pipe::Variable_path
• skip_empty() : vdj_pipe::File_ostream_variant
• skip_line() : vdj_pipe::detail::Parser_line
• sorted_ids() : vdj_pipe::Find_shared
• split_active_edge() : vdj_pipe::gdst::Ukkonen_inserter
• split_edge() : vdj_pipe::gdst::Gdst
• stamp_flag() : vdj_pipe::Lib_info
• start_file() : vdj_pipe::Pipe_environment
• step() : vdj_pipe::Pipeline< Config > , vdj_pipe::Step_variant_store
• Step_base() : vdj_pipe::detail::Step_base
• Step_base_paired() : vdj_pipe::detail::Step_base_paired
• Step_base_paired_emid() : vdj_pipe::detail::Step_base_paired_emid
• Step_base_single() : vdj_pipe::detail::Step_base_single
• Step_builder_registry() : vdj_pipe::step::Step_builder_registry< Config >
• Step_harness() : vdj_pipe::test::Step_harness< Step >
• Step_registry() : vdj_pipe::Step_registry
• steps() : vdj_pipe::Pipe_environment
• store() : vdj_pipe::Sequence_bstats
• store_records() : vdj_pipe::Pipe_paired_emid_read , vdj_pipe::Pipe_paired_read
• store_stats() : vdj_pipe::Group_unique
• str_nothrow() : vdj_pipe::Value_map
• subseq() : vdj_pipe::Unambiguous_interval_iter
• suffix() : vdj_pipe::gdst::Gdst
• suffix_link() : vdj_pipe::gdst::Gdst
• summary() : vdj_pipe::Apply_many , vdj_pipe::Apply_one , vdj_pipe::Blank_step , vdj_pipe::detail::Filter_base , vdj_pipe::detail::Step_base , vdj_pipe::detail::Window_filter_base , vdj_pipe::Find_shared , vdj_pipe::Match_step , vdj_pipe::Merge_paired , vdj_pipe::Pipe_environment , vdj_pipe::Write_seq , vdj_pipe::Write_value
• Summary_visitor() : vdj_pipe::Summary_visitor
• Summary_visitor2() : vdj_pipe::Summary_visitor2