Here is a list of all class members with links to the classes they belong to:

- i -

• i2s_ : vdj_pipe::Seq_store
• i_ : vdj_pipe::gdst::Match , vdj_pipe::Seq_file_map
• id() : vdj_pipe::gdst::Depth_iter , vdj_pipe::Seq_entry , vdj_pipe::Seq_file
• id0_ : vdj_pipe::detail::Id_bimap< Id, Obj > , vdj_pipe::detail::Id_map< Id, Obj, Stor >
• id1() : vdj_pipe::Best_match_pair< ID, Score >
• Id1() : vdj_pipe::test::Id1
• id1_ : vdj_pipe::Best_match_pair< ID, Score >
• id2() : vdj_pipe::Best_match_pair< ID, Score >
• Id2() : vdj_pipe::test::Id2
• id2_ : vdj_pipe::Best_match_pair< ID, Score >
• id_ : vdj_pipe::Id_iterator< Id > , vdj_pipe::Seq_entry , vdj_pipe::Seq_map_aligned::Match , vdj_pipe::Seq_meta , vdj_pipe::Seq_pos< Id >
• id_array : vdj_pipe::Value_ids_emid , vdj_pipe::Value_ids_paired , vdj_pipe::Value_ids_single
• Id_bimap() : vdj_pipe::detail::Id_bimap< Id, Obj >
• id_index : vdj_pipe::Read_ginfo_store , vdj_pipe::Seq_file_map
• Id_iterator() : vdj_pipe::Id_iterator< Id >
• id_iterator : vdj_pipe::Read_ginfo_store , vdj_pipe::Seq_file_map
• Id_iterator< Super > : vdj_pipe::detail::Base_id< Super, Val >
• Id_map() : vdj_pipe::detail::Id_map< Id, Obj, Stor >
• id_map : vdj_pipe::Seq_map_aligned
• id_str_ : vdj_pipe::Read_ginfo
• id_str_index : vdj_pipe::Read_ginfo_store
• id_str_iterator : vdj_pipe::Read_ginfo_store
• id_type : vdj_pipe::Best_match_pair< ID, Score > , vdj_pipe::detail::Id_bimap< Id, Obj > , vdj_pipe::detail::Id_map< Id, Obj, Stor > , vdj_pipe::detail::Named_value_map< Id, Val >
• id_vector : vdj_pipe::match::Match_combination
• ida_ : vdj_pipe::Value_ids_emid , vdj_pipe::Value_ids_paired , vdj_pipe::Value_ids_single
• identity_ : vdj_pipe::Seq_map_aligned::Match
• identity_name_ : vdj_pipe::match::Element_proto
• identity_val_id_ : vdj_pipe::match::Match_element_aligned
• idm_ : vdj_pipe::Seq_map_aligned
• ids_ : vdj_pipe::Find_shared , vdj_pipe::Histogram_step , vdj_pipe::Variable_path , vdj_pipe::Vm_access_paired , vdj_pipe::Vm_access_paired_emid , vdj_pipe::Vm_access_single
• idv_ : vdj_pipe::Apply_many::Visitor , vdj_pipe::File_ostream_variant
• ifs_ : vdj_pipe::File_istream
• ifs_ptr : vdj_pipe::File_istream
• ignore_dups_ : vdj_pipe::match::Element_proto
• im_ : vdj_pipe::Pipe_environment
• in_ : vdj_pipe::match::Match_element_factory
• in_manager_ptr : vdj_pipe::Pipe_environment
• in_path_ : vdj_pipe::Command_line_options
• in_v_t : vdj_pipe::Input_manager
• increment() : vdj_pipe::Id_iterator< Id >
• index : vdj_pipe::File_ostream_queue , vdj_pipe::gdst::Pattern_iter
• index1 : vdj_pipe::Seq_file_map
• index2 : vdj_pipe::Seq_file_map
• info_index_ : vdj_pipe::Read_info_store
• info_index_init() : vdj_pipe::Read_info_store
• info_map_ : vdj_pipe::Read_info_store
• info_map_t : vdj_pipe::Read_info_store
• info_mi_t : vdj_pipe::Read_info_store
• info_size_index_t : vdj_pipe::Read_info_store
• info_to_seq : vdj_pipe::Seq_store
• init() : vdj_pipe::gdst::Children , vdj_pipe::Variable_path
• init_options() : vdj_pipe::Command_line_options
• init_queue() : vdj_pipe::File_ostream_variant
• init_single() : vdj_pipe::File_ostream_variant
• init_stream() : vdj_pipe::Find_shared
• input() : vdj_pipe::Pipe_environment
• input_csv() : vdj_pipe::Pipe_environment
• input_csv_ : vdj_pipe::Command_line_options
• Input_manager() : vdj_pipe::Input_manager
• input_step : vdj_pipe::Config_paired_emid_reads , vdj_pipe::Config_paired_reads , vdj_pipe::Config_single_reads , vdj_pipe::Pipeline< Config >
• ins_ : vdj_pipe::Pipeline< Config >
• insert() : vdj_pipe::detail::Id_bimap< Id, Obj > , vdj_pipe::detail::Id_map< Id, Obj, Stor > , vdj_pipe::detail::Vector_set< T, Alloc > , vdj_pipe::gdst::Gdst , vdj_pipe::gdst::Ukkonen_inserter , vdj_pipe::Read_ginfo_store , vdj_pipe::Read_info_store , vdj_pipe::Seq_file_map , vdj_pipe::Seq_map_aligned , vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short , vdj_pipe::Seq_store
• Insert() : vdj_pipe::step::Step_builder_registry< Config >::Insert
• insert_combination() : vdj_pipe::match::Match_element_factory
• insert_element() : vdj_pipe::match::Match_element_factory
• insert_name() : vdj_pipe::detail::Named_value_map< Id, Val > , vdj_pipe::Value_map
• insert_new_name() : vdj_pipe::detail::Named_value_map< Id, Val > , vdj_pipe::Value_map
• Inserter() : vdj_pipe::detail::Inserter
• int1_t : vdj_pipe::base_exception
• int2_t : vdj_pipe::base_exception
• interval() : vdj_pipe::match::Element_proto , vdj_pipe::Vm_access_single
• interval_fwd() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• interval_rev() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• is_ : vdj_pipe::File_istream
• is_acceptable() : vdj_pipe::Best_match_pair< ID, Score >
• Is_ambiguous() : vdj_pipe::Is_ambiguous
• is_complete() : vdj_pipe::anonymous_namespace{pipe_paired_emid_read.cpp}::Four_file_ids
• is_empty() : vdj_pipe::detail::Interval_checking_policy< int >
• is_help() : vdj_pipe::Command_line_options
• is_nan() : vdj_pipe::detail::Interval_checking_policy< int >
• is_only_group() : vdj_pipe::Group_unique
• is_paired() : vdj_pipe::Input_manager , vdj_pipe::Seq_file_entry
• is_paired_ : vdj_pipe::Input_manager
• is_ptr : vdj_pipe::File_istream
• is_reverse() : vdj_pipe::Read_info , vdj_pipe::Seq_file , vdj_pipe::Value_ids_single , vdj_pipe::Vm_access_single
• is_reverse_ : vdj_pipe::Seq_file , vdj_pipe::Value_ids_single
• is_running_ : vdj_pipe::Pipe_environment
• istream() : vdj_pipe::File_istream
• iterator : vdj_pipe::detail::Id_bimap< Id, Obj > , vdj_pipe::detail::Id_map< Id, Obj, Stor > , vdj_pipe::detail::Named_value_map< Id, Val > , vdj_pipe::detail::Vector_set< T, Alloc > , vdj_pipe::Input_manager , vdj_pipe::Seq_file_entry , vdj_pipe::Seq_file_map , vdj_pipe::Seq_map_aligned , vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short , vdj_pipe::Seq_store , vdj_pipe::Step_registry , vdj_pipe::Value_map
• iv_ : vdj_pipe::Input_manager