Here is a list of all class members with links to the classes they belong to:
- r -
- range
: vdj_pipe::Step_registry
- re_name_
: vdj_pipe::match::Element_proto
- re_start_
: vdj_pipe::match::Cut_proto
, vdj_pipe::match::Element_proto
, vdj_pipe::match::Relative_position
- read_count()
: vdj_pipe::Pipe_environment
, vdj_pipe::Value_map
- read_count_i
: vdj_pipe::Value_map
- read_count_incr()
: vdj_pipe::Value_map
- read_count_reset()
: vdj_pipe::Value_map
- read_id()
: vdj_pipe::Value_map
- read_id_i
: vdj_pipe::Value_map
- read_id_nothrow()
: vdj_pipe::Value_map
- Read_info()
: vdj_pipe::Read_info
- Read_info_store()
: vdj_pipe::Read_info_store
- reads_skipped_
: vdj_pipe::Pipe_environment
- record
: vdj_pipe::Parser_fasta
, vdj_pipe::Parser_fastq
, vdj_pipe::Parser_qual
- redund_hist_
: vdj_pipe::Find_shared
- redundancy_histogram()
: vdj_pipe::Group_unique
- register_plot()
: vdj_pipe::Output_manager
- Relative_interval()
: vdj_pipe::match::Relative_interval
- Relative_position()
: vdj_pipe::match::Relative_position
- remove_subsequence()
: vdj_pipe::Seq_store
- require_best_
: vdj_pipe::detail::External_mid_base
, vdj_pipe::match::Element_proto
, vdj_pipe::match::Match_element_ambiguous
, vdj_pipe::match::Match_element_short
- required_
: vdj_pipe::match::Element_proto
, vdj_pipe::match::Match_element_battery
, vdj_pipe::match::Match_element_factory
- reserve()
: vdj_pipe::detail::Id_map< Id, Obj, Stor >
, vdj_pipe::detail::Vector_set< T, Alloc >
- reset()
: vdj_pipe::Vm_access_single
- reset_access()
: vdj_pipe::Blank_step
, vdj_pipe::detail::Step_base_single
, vdj_pipe::Histogram_step
, vdj_pipe::Write_value
- result()
: vdj_pipe::match::Match_element_positional
- result_type
: vdj_pipe::detail::Getter< Stor, Id, Obj, Result, MemFunPtr >
, vdj_pipe::Is_ambiguous
, vdj_pipe::step::Maker< Step >
- rev2frw()
: vdj_pipe::Seq_file_map
- reverse()
: vdj_pipe::Read_info
, vdj_pipe::Seq_file
, vdj_pipe::Value_names
- reverse_
: vdj_pipe::Find_shared
, vdj_pipe::Match_step
, vdj_pipe::Read_info
, vdj_pipe::Write_seq
- rgs_
: vdj_pipe::Find_shared
, vdj_pipe::Group_unique
- ri_
: vdj_pipe::match::Match_element_aligned
, vdj_pipe::match::Match_element_ambiguous
, vdj_pipe::match::Match_element_positional
, vdj_pipe::match::Match_element_short
- rid_
: vdj_pipe::Read_ginfo
- root()
: vdj_pipe::gdst::Gdst
- root_
: vdj_pipe::gdst::Gdst
, vdj_pipe::Input_manager
, vdj_pipe::Output_manager
- rp_
: vdj_pipe::match::Relative_interval
- run()
: vdj_pipe::Ambiguous_window_filter
, vdj_pipe::Apply_many
, vdj_pipe::Apply_one
, vdj_pipe::Average_quality_filter
, vdj_pipe::Average_quality_window_filter
, vdj_pipe::Blank_step
, vdj_pipe::Character_filter
, vdj_pipe::Composition_stats
, vdj_pipe::External_mid_infile
, vdj_pipe::External_mid_inline
, vdj_pipe::Find_shared
, vdj_pipe::Histogram_step
, vdj_pipe::Homopolymer_filter
, vdj_pipe::Length_filter
, vdj_pipe::Match_step
, vdj_pipe::Merge_paired
, vdj_pipe::Min_quality_filter
, vdj_pipe::Min_quality_window_filter
, vdj_pipe::Pipe_paired_emid_read
, vdj_pipe::Pipe_paired_read
, vdj_pipe::Pipe_single_read
, vdj_pipe::Pipeline< Config >
, vdj_pipe::Qual_stats
, vdj_pipe::test::Step_harness< Step >
, vdj_pipe::Write_seq
, vdj_pipe::Write_value