Here is a list of all class members with links to the classes they belong to:

- s -

• s2i_ : vdj_pipe::Seq_store
• s_ : vdj_pipe::gdst::Depth_iter
• same_size_ : vdj_pipe::detail::Seq_props
• sb_ : vdj_pipe::gdst::Branch
• score1() : vdj_pipe::Best_match_pair< ID, Score >
• score1_ : vdj_pipe::Best_match_pair< ID, Score >
• score2() : vdj_pipe::Best_match_pair< ID, Score >
• score2_ : vdj_pipe::Best_match_pair< ID, Score >
• score_ : vdj_pipe::Merge_result , vdj_pipe::Seq_map_aligned::Match
• score_id_ : vdj_pipe::Merge_paired
• score_name_ : vdj_pipe::match::Element_proto
• score_type : vdj_pipe::Best_match_pair< ID, Score >
• score_val_id_ : vdj_pipe::detail::External_mid_base , vdj_pipe::match::Match_element_aligned , vdj_pipe::match::Match_element_ambiguous , vdj_pipe::match::Match_element_short
• scoring_matrix_ : vdj_pipe::detail::External_mid_base , vdj_pipe::match::Match_element_ambiguous , vdj_pipe::match::Match_element_short
• seek_line() : vdj_pipe::detail::Parser_line
• self_type : vdj_pipe::detail::Base_id< Super, Val > , vdj_pipe::detail::Id_bimap< Id, Obj > , vdj_pipe::detail::Id_map< Id, Obj, Stor > , vdj_pipe::detail::Vector_set< T, Alloc > , vdj_pipe::Id_iterator< Id > , vdj_pipe::Seq_fls< N, S >
• Seq : vdj_pipe::Parser_fastq
• seq() : vdj_pipe::Seq_map_aligned , vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short
• seq2mid() : vdj_pipe::Seq_file_map
• seq2qual() : vdj_pipe::Seq_file_map
• seq_ : vdj_pipe::gdst::Common_subseq , vdj_pipe::match::Match_element_visitor , vdj_pipe::Merge_result , vdj_pipe::Seq_entry , vdj_pipe::Seq_file_entry , vdj_pipe::Seq_match , vdj_pipe::Seq_qual_record , vdj_pipe::Seq_record , vdj_pipe::Unambiguous_interval_iter
• Seq_entry() : vdj_pipe::Seq_entry
• seq_file() : vdj_pipe::Read_info
• Seq_file() : vdj_pipe::Seq_file
• seq_file_ : vdj_pipe::Read_info
• Seq_file_entry() : vdj_pipe::Seq_file_entry
• Seq_file_map : vdj_pipe::Seq_file , vdj_pipe::Seq_file_map
• seq_file_name() : vdj_pipe::Value_map
• Seq_fls() : vdj_pipe::Seq_fls< N, S >
• seq_fn_i : vdj_pipe::Value_map
• seq_frw_ : vdj_pipe::anonymous_namespace{pipe_paired_emid_read.cpp}::Four_file_ids
• seq_fwd : vdj_pipe::Value_ids_paired
• seq_id() : vdj_pipe::Seq_map_aligned
• seq_index : vdj_pipe::Seq_store
• seq_index_init() : vdj_pipe::Seq_store
• seq_iterator : vdj_pipe::File_ostream_queue
• seq_len_ : vdj_pipe::gdst::Gdst_stats
• seq_map : vdj_pipe::gdst::Gdst , vdj_pipe::Group_unique , vdj_pipe::match::Match_combination , vdj_pipe::Seq_map_aligned , vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short , vdj_pipe::Seq_store
• Seq_map_aligned() : vdj_pipe::Seq_map_aligned
• Seq_map_full() : vdj_pipe::Seq_map_full
• seq_map_ptr : vdj_pipe::gdst::Gdst , vdj_pipe::Seq_store
• Seq_map_short() : vdj_pipe::Seq_map_short
• seq_map_vector : vdj_pipe::match::Match_combination
• seq_mi_t : vdj_pipe::Seq_store
• seq_path_fwd : vdj_pipe::Value_ids_paired
• seq_path_rev : vdj_pipe::Value_ids_paired
• Seq_pos() : vdj_pipe::Seq_pos< Id >
• Seq_props() : vdj_pipe::detail::Seq_props
• seq_rev() : vdj_pipe::Seq_file_entry , vdj_pipe::Value_ids_paired
• seq_rev_ : vdj_pipe::anonymous_namespace{pipe_paired_emid_read.cpp}::Four_file_ids , vdj_pipe::Seq_file_entry
• seq_size() : vdj_pipe::Seq_map_short
• Seq_store() : vdj_pipe::Seq_store
• seq_string() : vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short
• seq_to_info : vdj_pipe::Seq_store
• seq_type : vdj_pipe::detail::Step_base , vdj_pipe::gdst::Gdst , vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short , vdj_pipe::Vm_access_paired , vdj_pipe::Vm_access_single
• seqs_ : vdj_pipe::match::Element_proto , vdj_pipe::Seq_map_full , vdj_pipe::Seq_map_short
• sequence : vdj_pipe::match::Match_combination , vdj_pipe::match::Match_element_aligned , vdj_pipe::match::Match_element_ambiguous , vdj_pipe::match::Match_element_battery , vdj_pipe::match::Match_element_positional , vdj_pipe::match::Match_element_short , vdj_pipe::match::Match_element_visitor , vdj_pipe::Merge_result , vdj_pipe::Parser_fasta , vdj_pipe::Parser_fastq , vdj_pipe::Seq_entry , vdj_pipe::Seq_file_entry , vdj_pipe::Seq_qual_record , vdj_pipe::Seq_record , vdj_pipe::Value_ids_single , vdj_pipe::Value_map , vdj_pipe::Vm_access_single
• Sequence_bstats() : vdj_pipe::Sequence_bstats
• sequence_fwd() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• Sequence_gstats() : vdj_pipe::Sequence_gstats
• sequence_map() : vdj_pipe::gdst::Gdst , vdj_pipe::Seq_store
• sequence_path() : vdj_pipe::Value_ids_single , vdj_pipe::Vm_access_single
• sequence_path_fwd() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• sequence_path_rev() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• sequence_rev() : vdj_pipe::Value_ids_paired , vdj_pipe::Vm_access_paired
• set() : vdj_pipe::Seq_fls< N, S >
• set_active_node() : vdj_pipe::gdst::Ukkonen_inserter
• set_branch_sl() : vdj_pipe::gdst::Ukkonen_inserter
• set_empty() : vdj_pipe::Vm_access_single
• set_interval() : vdj_pipe::match::Match_element_visitor
• set_leaf_sl() : vdj_pipe::gdst::Ukkonen_inserter
• set_meta() : vdj_pipe::detail::Parser_line
• set_mid() : vdj_pipe::Seq_file_map
• set_paired() : vdj_pipe::Seq_file_map
• set_path_input() : vdj_pipe::Command_line_options
• set_path_output() : vdj_pipe::Command_line_options
• set_reverse() : vdj_pipe::Vm_access_single
• set_seq_qual() : vdj_pipe::Seq_file_map
• set_stamp_flag() : vdj_pipe::Lib_info
• si_ : vdj_pipe::match::Match_element_visitor , vdj_pipe::Seq_map_aligned::Match , vdj_pipe::Seq_store
• sid_ : vdj_pipe::gdst::Ukkonen_inserter
• single() : vdj_pipe::Value_names
• single_read_names : vdj_pipe::Value_names
• size() : vdj_pipe::detail::Id_bimap< Id, Obj > , vdj_pipe::detail::Id_map< Id, Obj, Stor > , vdj_pipe::detail::Named_value_map< Id, Val > , vdj_pipe::detail::Vector_set< T, Alloc > , vdj_pipe::File_ostream_queue , vdj_pipe::File_ostream_variant , vdj_pipe::gdst::Gdst , vdj_pipe::Input_manager , vdj_pipe::match::Match_element_battery , vdj_pipe::Pipeline< Config > , vdj_pipe::Read_ginfo_store , vdj_pipe::Read_info , vdj_pipe::Read_info_store , vdj_pipe::Seq_entry , vdj_pipe::Seq_file_map , vdj_pipe::Seq_fls< N, S > , vdj_pipe::Seq_map_aligned , vdj_pipe::Seq_store , vdj_pipe::Value_map , vdj_pipe::Variable_path
• size_index : vdj_pipe::Seq_store
• size_iterator : vdj_pipe::Read_info_store , vdj_pipe::Seq_store
• size_range : vdj_pipe::Read_info_store , vdj_pipe::Seq_store
• size_type : vdj_pipe::detail::Vector_set< T, Alloc >
• skip_empty() : vdj_pipe::File_ostream_variant
• skip_empty_ : vdj_pipe::File_ostream_variant , vdj_pipe::Write_seq
• skip_line() : vdj_pipe::detail::Parser_line
• sl_ : vdj_pipe::gdst::Branch
• sm_ : vdj_pipe::match::Match_element_ambiguous , vdj_pipe::match::Match_element_short , vdj_pipe::Seq_store
• smf_ : vdj_pipe::detail::External_mid_base
• smm_ : vdj_pipe::Seq_file_map
• sms_ : vdj_pipe::detail::External_mid_base
• smv_ : vdj_pipe::match::Match_combination
• sorted_ids() : vdj_pipe::Find_shared
• sp_ : vdj_pipe::match::Element_proto
• split_active_edge() : vdj_pipe::gdst::Ukkonen_inserter
• split_edge() : vdj_pipe::gdst::Gdst
• sqm_ : vdj_pipe::Seq_file_map
• ss_ : vdj_pipe::Find_shared , vdj_pipe::gdst::Gdst , vdj_pipe::Group_unique
• st_ : vdj_pipe::gdst::Ukkonen_inserter , vdj_pipe::Group_unique , vdj_pipe::Seq_map_aligned
• stack : vdj_pipe::gdst::Depth_iter
• stamp_flag() : vdj_pipe::Lib_info
• start_ : vdj_pipe::gdst::Common_subseq
• start_defined_ : vdj_pipe::match::Element_proto
• start_file() : vdj_pipe::Pipe_environment
• State : vdj_pipe::Parser_fastq
• state_ : vdj_pipe::Parser_fastq
• step() : vdj_pipe::Pipeline< Config > , vdj_pipe::Step_variant_store , vdj_pipe::Wrap< Step >
• step_ : vdj_pipe::Apply_many , vdj_pipe::Apply_one , vdj_pipe::test::Step_harness< Step >
• Step_base() : vdj_pipe::detail::Step_base
• Step_base_paired() : vdj_pipe::detail::Step_base_paired
• Step_base_paired_emid() : vdj_pipe::detail::Step_base_paired_emid
• Step_base_single() : vdj_pipe::detail::Step_base_single
• Step_builder_registry() : vdj_pipe::step::Step_builder_registry< Config >
• Step_harness() : vdj_pipe::test::Step_harness< Step >
• step_ptr : vdj_pipe::test::Step_harness< Step >
• Step_registry() : vdj_pipe::Step_registry
• step_type : vdj_pipe::Pipeline_input< Config >
• step_variant : vdj_pipe::step::Step_builder_registry< Config >
• step_vector : vdj_pipe::Pipeline< Config > , vdj_pipe::Pipeline_input< Config >
• steps() : vdj_pipe::Pipe_environment
• steps_ : vdj_pipe::Pipe_environment
• stor : vdj_pipe::gdst::Children
• stor_ : vdj_pipe::detail::Getter< Stor, Id, Obj, Result, MemFunPtr >
• stor_t : vdj_pipe::detail::Vector_set< T, Alloc >
• store() : vdj_pipe::Sequence_bstats
• store_records() : vdj_pipe::Pipe_paired_emid_read , vdj_pipe::Pipe_paired_read
• store_stats() : vdj_pipe::Group_unique
• store_t : vdj_pipe::Read_ginfo_store
• str1_t : vdj_pipe::base_exception
• str2_t : vdj_pipe::base_exception
• str3_t : vdj_pipe::base_exception
• str_ : vdj_pipe::detail::Parser_line
• str_nothrow() : vdj_pipe::Value_map
• sub_seq_set : vdj_pipe::Seq_store
• subseq() : vdj_pipe::Unambiguous_interval_iter
• suff_ : vdj_pipe::gdst::Ukkonen_inserter
• suffix() : vdj_pipe::gdst::Gdst
• suffix_link() : vdj_pipe::gdst::Gdst
• suffix_tree : vdj_pipe::Seq_map_aligned
• summ_ : vdj_pipe::Find_shared
• summary() : vdj_pipe::Apply_many , vdj_pipe::Apply_one , vdj_pipe::Blank_step , vdj_pipe::detail::Filter_base , vdj_pipe::detail::Step_base , vdj_pipe::detail::Window_filter_base , vdj_pipe::Find_shared , vdj_pipe::Match_step , vdj_pipe::Merge_paired , vdj_pipe::Pipe_environment , vdj_pipe::Write_seq , vdj_pipe::Write_value
• summary_output_path_ : vdj_pipe::Pipe_environment
• Summary_visitor() : vdj_pipe::Summary_visitor
• Summary_visitor2() : vdj_pipe::Summary_visitor2
• super_seq_set : vdj_pipe::Seq_store
• sv_ : vdj_pipe::Pipeline< Config > , vdj_pipe::Queable_ofstream
• svv_ : vdj_pipe::Step_variant_store
• sz_ : vdj_pipe::File_ostream_queue